Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02247.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3781
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28


Found at i:17 original size:2 final size:2

Alignment explanation


    Indices: 11--45  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

          1 GGTTTCTAAA

                            *                                   
         11 AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

         46 CAAGGAGCAG


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00


Consensus pattern (2 bp):   
AG

Found at i:2541 original size:6 final size:6

Alignment explanation


    Indices: 2530--2555  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       2520 GAGGGTGAAC

                                          
       2530 GAAAGG GAAAGG GAAAGG GAAAGG GA
          1 GAAAGG GAAAGG GAAAGG GAAAGG GA

       2556 GTCGATGACA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (6 bp):   
GAAAGG

Done.