Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga05g02252.P1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3206
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.37
Found at i:2239 original size:71 final size:71
Alignment explanation
Indices: 2124--2270 Score: 294
Period size: 71 Copynumber: 2.1 Consensus size: 71
2114 TATTCATTCA
2124 TTTTTCACATCTCCTTTTTCATTTTTTTTGAATTCAACACATGCCCTATTGAATTCAAATAAATT
1 TTTTTCACATCTCCTTTTTCATTTTTTTTGAATTCAACACATGCCCTATTGAATTCAAATAAATT
2189 TAAGCT
66 TAAGCT
2195 TTTTTCACATCTCCTTTTTCATTTTTTTTGAATTCAACACATGCCCTATTGAATTCAAATAAATT
1 TTTTTCACATCTCCTTTTTCATTTTTTTTGAATTCAACACATGCCCTATTGAATTCAAATAAATT
2260 TAAGCT
66 TAAGCT
2266 TTTTT
1 TTTTT
2271 TATAGTTTAC
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 76 1.00
ACGTcount: A:0.27, C:0.19, G:0.05, T:0.48
Consensus pattern (71 bp):
TTTTTCACATCTCCTTTTTCATTTTTTTTGAATTCAACACATGCCCTATTGAATTCAAATAAATT
TAAGCT
Found at i:3154 original size:21 final size:20
Alignment explanation
Indices: 3120--3159 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
3110 ATTTTACTTC
3120 ATTTTTTATATTGTGTCTGTG
1 ATTTTTTATATTGT-TCTGTG
* *
3141 ATTTTTTTTCTTGTTCTGT
1 ATTTTTTATATTGTTCTGT
3160 TTCCAGGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.07, G:0.15, T:0.68
Consensus pattern (20 bp):
ATTTTTTATATTGTTCTGTG
Done.