Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02278.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 586

Length: 978
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:332 original size:6 final size:6

Alignment explanation


    Indices: 323--350  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

        313 CAAACACAAA

                                            
        323 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
          1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA

        351 GAAGGAACAG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14


Consensus pattern (6 bp):   
AAAAAT

Found at i:390 original size:13 final size:13

Alignment explanation


    Indices: 374--398  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        364 ATCGAAAGGT

                         
        374 GAAAAAAAGAAAA
          1 GAAAAAAAGAAAA

                        
        387 GAAAAAAAGAAA
          1 GAAAAAAAGAAA

        399 TCAAATCCAC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00


Consensus pattern (13 bp):   
GAAAAAAAGAAAA
Done.