Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02283.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1905
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28


Found at i:597 original size:25 final size:25

Alignment explanation


    Indices: 563--612  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        553 TCTACGATAT

                                     
        563 GTTAGTATAGCTTTATTGCAATAAA
          1 GTTAGTATAGCTTTATTGCAATAAA

                                     
        588 GTTAGTATAGCTTTATTGCAATAAA
          1 GTTAGTATAGCTTTATTGCAATAAA

        613 TACCTTGACT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40


Consensus pattern (25 bp):   
GTTAGTATAGCTTTATTGCAATAAA
Done.