Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02331.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1957
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32


Found at i:1097 original size:30 final size:30

Alignment explanation


    Indices: 1061--1120  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1051 CTATGAGATG

                                          
       1061 GATGATTGGGATGATGATTGCTCGGACTAC
          1 GATGATTGGGATGATGATTGCTCGGACTAC

                                          
       1091 GATGATTGGGATGATGATTGCTCGGACTAC
          1 GATGATTGGGATGATGATTGCTCGGACTAC

       1121 TCTGACAATT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.23, C:0.13, G:0.33, T:0.30


Consensus pattern (30 bp):   
GATGATTGGGATGATGATTGCTCGGACTAC

Found at i:1948 original size:23 final size:24

Alignment explanation


    Indices: 1897--1948  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 24

       1887 ATATATTTGA

                               *    
       1897 ATTTAAATTTCATGTAAAATAATC
          1 ATTTAAATTTCATGTAAAAAAATC

                         *           
       1921 A-TTAAA-TT-ATTTAAAAAAATTC
          1 ATTTAAATTTCATGTAAAAAAA-TC

                  
       1943 ATTTAA
          1 ATTTAA

       1949 GTTGTTAGG


Statistics
Matches: 24,  Mismatches: 2, Indels: 5
        0.77            0.06        0.16

Matches are distributed among these distances:
  21    9  0.38
  22    5  0.21
  23    9  0.38
  24    1  0.04

ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42


Consensus pattern (24 bp):   
ATTTAAATTTCATGTAAAAAAATC
Done.