Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02343.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2617
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28


Found at i:2545 original size:43 final size:43

Alignment explanation


    Indices: 2497--2582  Score: 163
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       2487 TGAAGTATGA

                                                       
       2497 TCGAAAGAATTGTTCATGAAATATAAAAAAGAATGGAATGTTG
          1 TCGAAAGAATTGTTCATGAAATATAAAAAAGAATGGAATGTTG

                                            *          
       2540 TCGAAAGAATTGTTCATGAAATATAAAAAAGAGTGGAATGTTG
          1 TCGAAAGAATTGTTCATGAAATATAAAAAAGAATGGAATGTTG

       2583 CTGGGAAAGT


Statistics
Matches: 42,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  43   42  1.00

ACGTcount: A:0.45, C:0.05, G:0.22, T:0.28


Consensus pattern (43 bp):   
TCGAAAGAATTGTTCATGAAATATAAAAAAGAATGGAATGTTG
Done.