Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02346.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3351
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33


Found at i:3149 original size:27 final size:26

Alignment explanation


    Indices: 3089--3149  Score: 68
    Period size: 27  Copynumber: 2.3  Consensus size: 26

       3079 ATAAGACTCC

                                      
       3089 ATTTTATTAGGATAATTAATATTAAG
          1 ATTTTATTAGGATAATTAATATTAAG

              **           *     *   * 
       3115 ATAATATTAGGATTATTTAATTTTAGG
          1 ATTTTATTAGGA-TAATTAATATTAAG

                    
       3142 ATTTTATT
          1 ATTTTATT

       3150 TTAATTATCT


Statistics
Matches: 27,  Mismatches: 7, Indels: 1
        0.77            0.20        0.03

Matches are distributed among these distances:
  26   10  0.37
  27   17  0.63

ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51


Consensus pattern (26 bp):   
ATTTTATTAGGATAATTAATATTAAG

Found at i:3164 original size:10 final size:10

Alignment explanation


    Indices: 3145--3176  Score: 57
    Period size: 10  Copynumber: 3.3  Consensus size: 10

       3135 TTTTAGGATT

                      
       3145 TTAT-TTTAA
          1 TTATCTTTAA

                      
       3154 TTATCTTTAA
          1 TTATCTTTAA

                      
       3164 TTATCTTTAA
          1 TTATCTTTAA

               
       3174 TTA
          1 TTA

       3177 ATTGTATTTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   9    4  0.18
  10   18  0.82

ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62


Consensus pattern (10 bp):   
TTATCTTTAA
Done.