Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02346.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2002
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:1800 original size:27 final size:26

Alignment explanation


    Indices: 1740--1800  Score: 68
    Period size: 27  Copynumber: 2.3  Consensus size: 26

       1730 ATAAGACTCC

                                      
       1740 ATTTTATTAGGATAATTAATATTAAG
          1 ATTTTATTAGGATAATTAATATTAAG

              **           *     *   * 
       1766 ATAATATTAGGATTATTTAATTTTAGG
          1 ATTTTATTAGGA-TAATTAATATTAAG

                    
       1793 ATTTTATT
          1 ATTTTATT

       1801 TTAATTATCT


Statistics
Matches: 27,  Mismatches: 7, Indels: 1
        0.77            0.20        0.03

Matches are distributed among these distances:
  26   10  0.37
  27   17  0.63

ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51


Consensus pattern (26 bp):   
ATTTTATTAGGATAATTAATATTAAG

Found at i:1815 original size:10 final size:10

Alignment explanation


    Indices: 1796--1827  Score: 57
    Period size: 10  Copynumber: 3.3  Consensus size: 10

       1786 TTTTAGGATT

                      
       1796 TTAT-TTTAA
          1 TTATCTTTAA

                      
       1805 TTATCTTTAA
          1 TTATCTTTAA

                      
       1815 TTATCTTTAA
          1 TTATCTTTAA

               
       1825 TTA
          1 TTA

       1828 ATTGTATTTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   9    4  0.18
  10   18  0.82

ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62


Consensus pattern (10 bp):   
TTATCTTTAA
Done.