Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02359.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1352
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31


Found at i:942 original size:44 final size:44

Alignment explanation


    Indices: 874--1162  Score: 425
    Period size: 44  Copynumber: 6.6  Consensus size: 44

        864 TGCTTCTTGT

                               *                      * 
        874 CAATACAGAGACGCCAAATATGCTATCTTCGATCTGCTCTCCAC
          1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

               *        * *                             
        918 CAAAACAGAGACTCTAAATCTGCTATCTTCGATCTGCTCTCCGC
          1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

               *                                     *  
        962 CAAAACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGC
          1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

                                                   *    
       1006 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCCCCGC
          1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

                 *     *          **   *                
       1050 CAATATAGAGATGCCAAATCTGAGATCCTCGATCTGCTCTCCGC
          1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

                       *  *                         **  
       1094 CAATACAGAGATGCTAAATCTGCTATCTTCGATCTGCTCTTTGC
          1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

                                     
       1138 CAATACAGAGACGCCAAATCTGCTA
          1 CAATACAGAGACGCCAAATCTGCTA

       1163 GATTTACCAA


Statistics
Matches: 219,  Mismatches: 26, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  44  219  1.00

ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26


Consensus pattern (44 bp):   
CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

Done.