Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02359.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1814
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33


Found at i:1404 original size:44 final size:44

Alignment explanation


    Indices: 1336--1624  Score: 425
    Period size: 44  Copynumber: 6.6  Consensus size: 44

       1326 TGCTTCTTGT

                               *                      * 
       1336 CAATACAGAGACGCCAAATATGCTATCTTCGATCTGCTCTCCAC
          1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

               *        * *                             
       1380 CAAAACAGAGACTCTAAATCTGCTATCTTCGATCTGCTCTCCGC
          1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

               *                                     *  
       1424 CAAAACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGC
          1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

                                                   *    
       1468 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCCCCGC
          1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

                 *     *          **   *                
       1512 CAATATAGAGATGCCAAATCTGAGATCCTCGATCTGCTCTCCGC
          1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

                       *  *                         **  
       1556 CAATACAGAGATGCTAAATCTGCTATCTTCGATCTGCTCTTTGC
          1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

                                     
       1600 CAATACAGAGACGCCAAATCTGCTA
          1 CAATACAGAGACGCCAAATCTGCTA

       1625 GATTTACCAA


Statistics
Matches: 219,  Mismatches: 26, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  44  219  1.00

ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26


Consensus pattern (44 bp):   
CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC

Done.