Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02383.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2022
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Found at i:1886 original size:42 final size:42

Alignment explanation


    Indices: 1827--1916  Score: 171
    Period size: 42  Copynumber: 2.1  Consensus size: 42

       1817 GGATTATATC

                                                      
       1827 AGAAATGAGTTCAGTACTTTCACAATGCTGATAAGTAAAGAG
          1 AGAAATGAGTTCAGTACTTTCACAATGCTGATAAGTAAAGAG

                                                *     
       1869 AGAAATGAGTTCAGTACTTTCACAATGCTGATAAGTGAAGAG
          1 AGAAATGAGTTCAGTACTTTCACAATGCTGATAAGTAAAGAG

                  
       1911 AGAAAT
          1 AGAAAT

       1917 TATAGTATGA


Statistics
Matches: 47,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  42   47  1.00

ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26


Consensus pattern (42 bp):   
AGAAATGAGTTCAGTACTTTCACAATGCTGATAAGTAAAGAG
Done.