Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02398.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3057
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31


Found at i:2578 original size:2 final size:2

Alignment explanation


    Indices: 2565--2600  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       2555 CTGTTAAACG

                      *                                          
       2565 CA CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CA
          1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA

       2601 TGTATATATT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.47, C:0.50, G:0.03, T:0.00


Consensus pattern (2 bp):   
CA

Done.