Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02405.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3170
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27


Found at i:1025 original size:23 final size:23

Alignment explanation


    Indices: 998--1041  Score: 63
    Period size: 23  Copynumber: 1.9  Consensus size: 23

        988 GAACCCTGAT

                            *       
        998 ATGGGCAAAT-GGAAACCGGTACG
          1 ATGGGC-AATGGGAAAACGGTACG

                                 
       1021 ATGGGCAATGGGAAAACGGTA
          1 ATGGGCAATGGGAAAACGGTA

       1042 TGCCCAAAGG


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  22    3  0.16
  23   16  0.84

ACGTcount: A:0.36, C:0.14, G:0.36, T:0.14


Consensus pattern (23 bp):   
ATGGGCAATGGGAAAACGGTACG
Done.