Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02406.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5215
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:5089 original size:8 final size:8

Alignment explanation


    Indices: 5076--5114  Score: 62
    Period size: 8  Copynumber: 4.9  Consensus size: 8

       5066 TCCTCTTCAT

                    
       5076 TTATTTTA
          1 TTATTTTA

                    
       5084 TTATTTTA
          1 TTATTTTA

                     
       5092 TTTATTTTA
          1 -TTATTTTA

                    
       5101 TTATTTTA
          1 TTATTTTA

                   
       5109 TT-TTTT
          1 TTATTTT

       5115 TTAAAGCAAT


Statistics
Matches: 30,  Mismatches: 0, Indels: 3
        0.91            0.00        0.09

Matches are distributed among these distances:
   7    4  0.13
   8   18  0.60
   9    8  0.27

ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79


Consensus pattern (8 bp):   
TTATTTTA

Found at i:5096 original size:17 final size:17

Alignment explanation


    Indices: 5074--5117  Score: 79
    Period size: 17  Copynumber: 2.6  Consensus size: 17

       5064 TTTCCTCTTC

                             
       5074 ATTTATTTTATTATTTT
          1 ATTTATTTTATTATTTT

                             
       5091 ATTTATTTTATTATTTT
          1 ATTTATTTTATTATTTT

                *     
       5108 ATTTTTTTTA
          1 ATTTATTTTA

       5118 AAGCAATAAC


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  17   26  1.00

ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77


Consensus pattern (17 bp):   
ATTTATTTTATTATTTT
Done.