Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02427.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1802
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24


Found at i:916 original size:3 final size:3

Alignment explanation


    Indices: 856--898  Score: 59
    Period size: 3  Copynumber: 14.3  Consensus size: 3

        846 TGGTGATGAT

                 *            *       *                              
        856 GAA GGA GAA GAA GAC GAA GAG GAA GAA GAA GAA GAA GAA GAA G
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G

        899 TGAAGCCCAA


Statistics
Matches: 34,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.58, C:0.02, G:0.40, T:0.00


Consensus pattern (3 bp):   
GAA
Done.