Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02448.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3603
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26


Found at i:3530 original size:41 final size:41

Alignment explanation


    Indices: 3485--3572  Score: 167
    Period size: 41  Copynumber: 2.1  Consensus size: 41

       3475 AGGTATGCTG

                                                     
       3485 TTTCTCTAGATTAGTTTTGAAGAAATGGGAACTTGTATGTT
          1 TTTCTCTAGATTAGTTTTGAAGAAATGGGAACTTGTATGTT

                     *                               
       3526 TTTCTCTAGGTTAGTTTTGAAGAAATGGGAACTTGTATGTT
          1 TTTCTCTAGATTAGTTTTGAAGAAATGGGAACTTGTATGTT

                  
       3567 TTTCTC
          1 TTTCTC

       3573 GTACCAGTTT


Statistics
Matches: 46,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  41   46  1.00

ACGTcount: A:0.24, C:0.09, G:0.22, T:0.45


Consensus pattern (41 bp):   
TTTCTCTAGATTAGTTTTGAAGAAATGGGAACTTGTATGTT
Done.