Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02460.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7448
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29


Found at i:86 original size:3 final size:3

Alignment explanation


    Indices: 78--114  Score: 56
    Period size: 3  Copynumber: 12.3  Consensus size: 3

         68 CCTCCTACAT

                                         *       *           
         78 CCA CCA CCA CCA CCA CCA CCA CAA CCA CAA CCA CCA C
          1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA C

        115 GCCAACCACC


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.38, C:0.62, G:0.00, T:0.00


Consensus pattern (3 bp):   
CCA

Found at i:3246 original size:18 final size:18

Alignment explanation


    Indices: 3223--3257  Score: 70
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       3213 GGAACCAGAA

                              
       3223 GTTAAAGTATCTAGTACT
          1 GTTAAAGTATCTAGTACT

                             
       3241 GTTAAAGTATCTAGTAC
          1 GTTAAAGTATCTAGTAC

       3258 AGACGATCTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.34, C:0.11, G:0.17, T:0.37


Consensus pattern (18 bp):   
GTTAAAGTATCTAGTACT
Done.