Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02466.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4771
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:1285 original size:33 final size:33

Alignment explanation


    Indices: 1243--1306  Score: 119
    Period size: 33  Copynumber: 1.9  Consensus size: 33

       1233 TTTCTTCTTG

                                             
       1243 ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
          1 ACATTCCAGCTCCTGTCCAGCAACAAAACACCC

                                    *      
       1276 ACATTCCAGCTCCTGTCCAGCAACCAAACAC
          1 ACATTCCAGCTCCTGTCCAGCAACAAAACAC

       1307 TCCCACTCAG


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   30  1.00

ACGTcount: A:0.33, C:0.42, G:0.09, T:0.16


Consensus pattern (33 bp):   
ACATTCCAGCTCCTGTCCAGCAACAAAACACCC

Found at i:3750 original size:81 final size:81

Alignment explanation


    Indices: 3636--3798  Score: 236
    Period size: 81  Copynumber: 2.0  Consensus size: 81

       3626 TCATTACCTG

                          *      *     **                      *             
       3636 TCTTAAATACAATGTTCACACTTGACCGGTGTAGAGTTGTTTATAGTGAAATTCTACAGTTCATT
          1 TCTTAAATACAATGCTCACACCTGACCAATGTAGAGTTGTTTATAGTGAAACTCTACAGTTCATT

                            
       3701 TAGATGGTGCTCATCA
         66 TAGATGGTGCTCATCA

                     * *                                     *      *        
       3717 TCTTAAATATAGTGCTCACACCTGACCAATGTAGAGTTGTTTATAGTGATACTCTATAGTTCATT
          1 TCTTAAATACAATGCTCACACCTGACCAATGTAGAGTTGTTTATAGTGAAACTCTACAGTTCATT

                        *   
       3782 TAGATGGTGCTCGTCA
         66 TAGATGGTGCTCATCA

             
       3798 T
          1 T

       3799 TCTATCATGC


Statistics
Matches: 72,  Mismatches: 10, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  81   72  1.00

ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37


Consensus pattern (81 bp):   
TCTTAAATACAATGCTCACACCTGACCAATGTAGAGTTGTTTATAGTGAAACTCTACAGTTCATT
TAGATGGTGCTCATCA
Done.