Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02470.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4993
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.34


Found at i:2086 original size:76 final size:76

Alignment explanation


    Indices: 1984--2135  Score: 286
    Period size: 76  Copynumber: 2.0  Consensus size: 76

       1974 AACCCTCTGT

                                                     *                       
       1984 ATTGCAAGTCATGTCGACTGCTTAGAGTTAGAAAAGGAGGTTGTAATAAGTAGAAGGCTTAAAAT
          1 ATTGCAAGTCATGTCGACTGCTTAGAGTTAGAAAAGGAGGTAGTAATAAGTAGAAGGCTTAAAAT

                       
       2049 TGTTTATTATC
         66 TGTTTATTATC

                                                                         *   
       2060 ATTGCAAGTCATGTCGACTGCTTAGAGTTAGAAAAGGAGGTAGTAATAAGTAGAAGGCTTAGAAT
          1 ATTGCAAGTCATGTCGACTGCTTAGAGTTAGAAAAGGAGGTAGTAATAAGTAGAAGGCTTAAAAT

                       
       2125 TGTTTATTATC
         66 TGTTTATTATC

       2136 TCCCTAAAAG


Statistics
Matches: 74,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  76   74  1.00

ACGTcount: A:0.34, C:0.09, G:0.24, T:0.32


Consensus pattern (76 bp):   
ATTGCAAGTCATGTCGACTGCTTAGAGTTAGAAAAGGAGGTAGTAATAAGTAGAAGGCTTAAAAT
TGTTTATTATC
Done.