Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02505.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4602
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.41


Found at i:583 original size:6 final size:6

Alignment explanation


    Indices: 572--602  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        562 TGTTGTTCAA

                                                
        572 TTCCTC TTCCTC TTCCTC TTCCTC TTCCTC T
          1 TTCCTC TTCCTC TTCCTC TTCCTC TTCCTC T

        603 CCTTCTGTTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (6 bp):   
TTCCTC

Found at i:3543 original size:2 final size:2

Alignment explanation


    Indices: 3536--3579  Score: 88
    Period size: 2  Copynumber: 22.0  Consensus size: 2

       3526 CCTCCTTTCA

                                                                          
       3536 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

              
       3578 CT
          1 CT

       3580 TCACCACACA


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   42  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
CT

Done.