Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02506.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3360
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:2573 original size:24 final size:24

Alignment explanation


    Indices: 2545--2602  Score: 64
    Period size: 24  Copynumber: 2.4  Consensus size: 24

       2535 CATCTTAGGC

                       *             
       2545 TCTTGTTCTTCTTCTGGTTCTTG-T
          1 TCTTGTTCTTCGTCTGGTTC-TGAT

                 *    *             
       2569 TCTTGCTCTTGGTCTGGTTCTGAT
          1 TCTTGTTCTTCGTCTGGTTCTGAT

                      
       2593 TCTTCGTTCT
          1 TCTT-GTTCT

       2603 GTTCCTCAAT


Statistics
Matches: 28,  Mismatches: 4, Indels: 3
        0.80            0.11        0.09

Matches are distributed among these distances:
  23    2  0.07
  24   22  0.79
  25    4  0.14

ACGTcount: A:0.02, C:0.22, G:0.19, T:0.57


Consensus pattern (24 bp):   
TCTTGTTCTTCGTCTGGTTCTGAT
Done.