Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02528.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4722
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30


Found at i:1374 original size:2 final size:2

Alignment explanation


    Indices: 1367--1399  Score: 57
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       1357 CTTAGGCCAA

                                              *              
       1367 AG AG AG AG AG AG AG AG AG AG AG AA AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

       1400 AAAGACTAGA


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00


Consensus pattern (2 bp):   
AG

Found at i:3881 original size:23 final size:23

Alignment explanation


    Indices: 3855--3900  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       3845 ATGACGAACA

                                   
       3855 CTGCAACACCCATGATTTGTATT
          1 CTGCAACACCCATGATTTGTATT

                                   
       3878 CTGCAACACCCATGATTTGTATT
          1 CTGCAACACCCATGATTTGTATT

       3901 TGTCCCACAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35


Consensus pattern (23 bp):   
CTGCAACACCCATGATTTGTATT
Done.