Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02528.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 902

Length: 1504
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29


Found at i:1374 original size:2 final size:2

Alignment explanation


    Indices: 1367--1399  Score: 57
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       1357 CTTAGGCCAA

                                              *              
       1367 AG AG AG AG AG AG AG AG AG AG AG AA AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

       1400 AAAGACTAGA


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00


Consensus pattern (2 bp):   
AG

Done.