Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02532.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2128
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:414 original size:86 final size:85

Alignment explanation


    Indices: 314--474  Score: 261
    Period size: 86  Copynumber: 1.9  Consensus size: 85

        304 AATACTTACA

                                                      *                      
        314 TTTTTTTTAGCAATTTTGCCTTTGTTCTTTCTTT-TTTTAAGTTAAATTTAGTCTGCTTCCAACT
          1 TTTTTTTTAGCAATTTTGCCTTTGTTCTTTCTTTCTTTT-AGCTAAATTTA-TCTGCTTCCAACT

                                  
        378 TTCAAAAAGAGTGTTATACATT
         64 TTCAAAAAGAGTGTTATACATT

                     *         *                                      *      
        400 TTTTTTTTATCAATTTTGCTTTTGTTCTTTCTTTCTTTTAGCTAAATTTATCTGCTTCTAACTTT
          1 TTTTTTTTAGCAATTTTGCCTTTGTTCTTTCTTTCTTTTAGCTAAATTTATCTGCTTCCAACTTT

                      
        465 CAAAAAGAGT
         66 CAAAAAGAGT

        475 TTGCTTGCCC


Statistics
Matches: 70,  Mismatches: 4, Indels: 3
        0.91            0.05        0.04

Matches are distributed among these distances:
  85   24  0.34
  86   42  0.60
  87    4  0.06

ACGTcount: A:0.22, C:0.14, G:0.09, T:0.54


Consensus pattern (85 bp):   
TTTTTTTTAGCAATTTTGCCTTTGTTCTTTCTTTCTTTTAGCTAAATTTATCTGCTTCCAACTTT
CAAAAAGAGTGTTATACATT
Done.