Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02546.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4286
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:4198 original size:39 final size:39

Alignment explanation


    Indices: 4154--4249  Score: 174
    Period size: 39  Copynumber: 2.5  Consensus size: 39

       4144 TTTAACTTAG

                                                   
       4154 GATTTGATGATTCAGTTTATTTCATTAGAATGATGAACT
          1 GATTTGATGATTCAGTTTATTTCATTAGAATGATGAACT

                                                   
       4193 GATTTGATGATTCAGTTTATTTCATTAGAATGATGAACT
          1 GATTTGATGATTCAGTTTATTTCATTAGAATGATGAACT

                *       *     
       4232 GATTGGATGATTGAGTTT
          1 GATTTGATGATTCAGTTT

       4250 CTTCTTCAGC


Statistics
Matches: 55,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  39   55  1.00

ACGTcount: A:0.29, C:0.06, G:0.21, T:0.44


Consensus pattern (39 bp):   
GATTTGATGATTCAGTTTATTTCATTAGAATGATGAACT
Done.