Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02548.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1865
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31


Found at i:647 original size:19 final size:19

Alignment explanation


    Indices: 623--662  Score: 71
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        613 CATCCCCTGG

                               
        623 AGTGGAGGGCGAATAAAGA
          1 AGTGGAGGGCGAATAAAGA

                     *         
        642 AGTGGAGGGTGAATAAAGA
          1 AGTGGAGGGCGAATAAAGA

              
        661 AG
          1 AG

        663 GTGTTCCATA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.42, C:0.03, G:0.42, T:0.12


Consensus pattern (19 bp):   
AGTGGAGGGCGAATAAAGA
Done.