Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02556.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2142
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:893 original size:29 final size:29

Alignment explanation


    Indices: 851--908  Score: 107
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        841 ATTGTTGGAG

                   *                     
        851 AACGCAGGTTTATGTTGGTTGATAGTGGT
          1 AACGCAGCTTTATGTTGGTTGATAGTGGT

                                         
        880 AACGCAGCTTTATGTTGGTTGATAGTGGT
          1 AACGCAGCTTTATGTTGGTTGATAGTGGT

        909 TCATAGATAT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.21, C:0.09, G:0.33, T:0.38


Consensus pattern (29 bp):   
AACGCAGCTTTATGTTGGTTGATAGTGGT
Done.