Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02560.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2201
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28


Found at i:2037 original size:15 final size:15

Alignment explanation


    Indices: 2017--2047  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2007 CGGTGAGAGG

                           
       2017 AAAAAGGAAAAGAAA
          1 AAAAAGGAAAAGAAA

                      *    
       2032 AAAAAGGAAATGAAA
          1 AAAAAGGAAAAGAAA

             
       2047 A
          1 A

       2048 TTTTGTCTTA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.77, C:0.00, G:0.19, T:0.03


Consensus pattern (15 bp):   
AAAAAGGAAAAGAAA
Done.