Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00121.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3590
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:1046 original size:55 final size:55

Alignment explanation


    Indices: 977--1086  Score: 193
    Period size: 55  Copynumber: 2.0  Consensus size: 55

        967 TAATTCTTCA

                                   **                              
        977 TTAAAAATTCTATCAATTTCTACGGTTGAAAAACTAGTTTTTATACATCAATAGG
          1 TTAAAAATTCTATCAATTTCTACAATTGAAAAACTAGTTTTTATACATCAATAGG

                     *                                             
       1032 TTAAAAATTTTATCAATTTCTACAATTGAAAAACTAGTTTTTATACATCAATAGG
          1 TTAAAAATTCTATCAATTTCTACAATTGAAAAACTAGTTTTTATACATCAATAGG

       1087 AGATATACGT


Statistics
Matches: 52,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  55   52  1.00

ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39


Consensus pattern (55 bp):   
TTAAAAATTCTATCAATTTCTACAATTGAAAAACTAGTTTTTATACATCAATAGG
Done.