Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02580.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1100
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36


Found at i:214 original size:3 final size:3

Alignment explanation


    Indices: 206--251  Score: 83
    Period size: 3  Copynumber: 15.3  Consensus size: 3

        196 GAATCCCAGG

                                                                 *       
        206 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA T
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T

        252 GGCATTGACG


Statistics
Matches: 41,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   41  1.00

ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65


Consensus pattern (3 bp):   
TTA

Done.