Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02587.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4438
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:357 original size:53 final size:53

Alignment explanation


    Indices: 272--380  Score: 173
    Period size: 53  Copynumber: 2.1  Consensus size: 53

        262 GTAAAATTGG

                      *                                          
        272 TCTGTTTATTGGTTAGTGAACAATAGAACCCGGCAAACCTTTTCATTTTCCTA
          1 TCTGTTTATTCGTTAGTGAACAATAGAACCCGGCAAACCTTTTCATTTTCCTA

                   *                   *       *       *         
        325 TCTGTTTGTTCGTTAGTGAACAATAGAGCCCGGCATACCTTTTGATTTTCCTA
          1 TCTGTTTATTCGTTAGTGAACAATAGAACCCGGCAAACCTTTTCATTTTCCTA

               
        378 TCT
          1 TCT

        381 TCTCAGATCC


Statistics
Matches: 51,  Mismatches: 5, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  53   51  1.00

ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39


Consensus pattern (53 bp):   
TCTGTTTATTCGTTAGTGAACAATAGAACCCGGCAAACCTTTTCATTTTCCTA
Done.