Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02604.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 483

Length: 805
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30


Found at i:642 original size:2 final size:2

Alignment explanation


    Indices: 635--673  Score: 60
    Period size: 2  Copynumber: 19.5  Consensus size: 2

        625 CAAAGCAAAA

                                                      *      *        
        635 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AA AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

        674 GAATAATATT


Statistics
Matches: 33,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46


Consensus pattern (2 bp):   
AT

Done.