Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02619.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4119
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.31


Found at i:195 original size:21 final size:21

Alignment explanation


    Indices: 171--213  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        161 CTTATCATTA

                                 
        171 TTCTCCAATTTACTCAGATTT
          1 TTCTCCAATTTACTCAGATTT

                        *        
        192 TTCTCCAATTTATTCAGATTT
          1 TTCTCCAATTTACTCAGATTT

             
        213 T
          1 T

        214 GATTTGTTTG


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51


Consensus pattern (21 bp):   
TTCTCCAATTTACTCAGATTT

Found at i:2621 original size:5 final size:5

Alignment explanation


    Indices: 2611--2635  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

       2601 GGAATGTAAC

                                         
       2611 ATTTT ATTTT ATTTT ATTTT ATTTT
          1 ATTTT ATTTT ATTTT ATTTT ATTTT

       2636 CTTTAACAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80


Consensus pattern (5 bp):   
ATTTT

Found at i:3132 original size:13 final size:13

Alignment explanation


    Indices: 3114--3141  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       3104 TAAAAATGTA

                         
       3114 CACATAATTGAAT
          1 CACATAATTGAAT

                         
       3127 CACATAATTGAAT
          1 CACATAATTGAAT

              
       3140 CA
          1 CA

       3142 TGAAACTGTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.46, C:0.18, G:0.07, T:0.29


Consensus pattern (13 bp):   
CACATAATTGAAT
Done.