Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02623.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2819
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35


Found at i:1717 original size:38 final size:38

Alignment explanation


    Indices: 1666--1744  Score: 149
    Period size: 38  Copynumber: 2.1  Consensus size: 38

       1656 GTTATGGTTA

                                                  
       1666 TTAAAGATTGAGATAATTGACATAATGCCACTATATCT
          1 TTAAAGATTGAGATAATTGACATAATGCCACTATATCT

                                    *             
       1704 TTAAAGATTGAGATAATTGACATAGTGCCACTATATCT
          1 TTAAAGATTGAGATAATTGACATAATGCCACTATATCT

               
       1742 TTA
          1 TTA

       1745 TATGTTCATT


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  38   40  1.00

ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35


Consensus pattern (38 bp):   
TTAAAGATTGAGATAATTGACATAATGCCACTATATCT

Found at i:2728 original size:1 final size:1

Alignment explanation


    Indices: 2722--2747  Score: 52
    Period size: 1  Copynumber: 26.0  Consensus size: 1

       2712 TGCATTCTAG

                                      
       2722 TTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTT

       2748 CTCGTGTCAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   25  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.