Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02628.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5382
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:497 original size:42 final size:42

Alignment explanation


    Indices: 431--514  Score: 123
    Period size: 42  Copynumber: 2.0  Consensus size: 42

        421 TGCTGAGTTA

                                          * *         
        431 GGTAAAGATGAGAAATTTGAGGCAGATGGTGGTCAGGAACCG
          1 GGTAAAGATGAGAAATTTGAGGCAGATGGTAGCCAGGAACCG

                   *      *    *                      
        473 GGTAAAGTTGAGAATTTTGGGGCAGATGGTAGCCAGGAACCG
          1 GGTAAAGATGAGAAATTTGAGGCAGATGGTAGCCAGGAACCG

        515 CCTACTAAAG


Statistics
Matches: 37,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  42   37  1.00

ACGTcount: A:0.31, C:0.11, G:0.38, T:0.20


Consensus pattern (42 bp):   
GGTAAAGATGAGAAATTTGAGGCAGATGGTAGCCAGGAACCG
Done.