Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02635.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 495

Length: 826
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29


Found at i:566 original size:24 final size:24

Alignment explanation


    Indices: 534--637  Score: 163
    Period size: 24  Copynumber: 4.3  Consensus size: 24

        524 CAGAGAACAG

                                    
        534 GAAGGTGGCAAGAGTACGACACAA
          1 GAAGGTGGCAAGAGTACGACACAA

                                    
        558 GAAGGTGGCAAGAGTACGACACAA
          1 GAAGGTGGCAAGAGTACGACACAA

                            *       
        582 GAAGGTGGCAAGAGTAAGACACAA
          1 GAAGGTGGCAAGAGTACGACACAA

                  * *    *  *       
        606 GAAGGTAGTAAGAATAGGACACAA
          1 GAAGGTGGCAAGAGTACGACACAA

                    
        630 GAAGGTGG
          1 GAAGGTGG

        638 AAACAAGACT


Statistics
Matches: 74,  Mismatches: 6, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  24   74  1.00

ACGTcount: A:0.43, C:0.12, G:0.35, T:0.10


Consensus pattern (24 bp):   
GAAGGTGGCAAGAGTACGACACAA

Done.