Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02644.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3191
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29


Found at i:2870 original size:41 final size:41

Alignment explanation


    Indices: 2825--2904  Score: 160
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       2815 GCAGATTACG

                                                     
       2825 AAGGCAACATGGGTTAACATACGACTGCCTCGTCCAGTGTT
          1 AAGGCAACATGGGTTAACATACGACTGCCTCGTCCAGTGTT

                                                   
       2866 AAGGCAACATGGGTTAACATACGACTGCCTCGTCCAGTG
          1 AAGGCAACATGGGTTAACATACGACTGCCTCGTCCAGTG

       2905 GGTTAACACA


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  41   39  1.00

ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23


Consensus pattern (41 bp):   
AAGGCAACATGGGTTAACATACGACTGCCTCGTCCAGTGTT
Done.