Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02645.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2006
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30


Found at i:67 original size:2 final size:2

Alignment explanation


    Indices: 16--48  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

          6 CTAAACTTAA

                                                             
         16 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C

         49 ATGGATTCTC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (2 bp):   
CT
Done.