Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01203.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6139
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.30


Found at i:2394 original size:293 final size:293

Alignment explanation


    Indices: 1867--2449  Score: 1121
    Period size: 293  Copynumber: 2.0  Consensus size: 293

       1857 CTGCAAATAT

                                          *                                  
       1867 AAGATAAGTAATTGTTAGAAAAGATCTACCTTTCCTAATTTGCCAATCTCATAAGTGCTGACAAA
          1 AAGATAAGTAATTGTTAGAAAAGATCTACCCTTCCTAATTTGCCAATCTCATAAGTGCTGACAAA

                                                *             *              
       1932 CCTTCTCCACTGAATAGAAACAAATAAGGGCTTAACGGGTCACCTTGGCGGAATCCCCTTGTTGC
         66 CCTTCTCCACTGAATAGAAACAAATAAGGGCTTAACAGGTCACCTTGGCGCAATCCCCTTGTTGC

               *                                                             
       1997 CCTGAAAATTGAGCCCTCTTCCCCATTAATTAAAATAGAGTATTTAACAGAATTAATACAACGGA
        131 CCTAAAAATTGAGCCCTCTTCCCCATTAATTAAAATAGAGTATTTAACAGAATTAATACAACGGA

                                                                             
       2062 AAATAACATCCATAAATACTTCTGTACAACTCATTTTTGTCATTACCCCTTTGATAAAAGACCAT
        196 AAATAACATCCATAAATACTTCTGTACAACTCATTTTTGTCATTACCCCTTTGATAAAAGACCAT

                                             
       2127 TTCACTCTATCATAAGCCTTACTCTTGTCAGAA
        261 TTCACTCTATCATAAGCCTTACTCTTGTCAGAA

                                                                             
       2160 AAGATAAGTAATTGTTAGAAAAGATCTACCCTTCCTAATTTGCCAATCTCATAAGTGCTGACAAA
          1 AAGATAAGTAATTGTTAGAAAAGATCTACCCTTCCTAATTTGCCAATCTCATAAGTGCTGACAAA

                                                                             
       2225 CCTTCTCCACTGAATAGAAACAAATAAGGGCTTAACAGGTCACCTTGGCGCAATCCCCTTGTTGC
         66 CCTTCTCCACTGAATAGAAACAAATAAGGGCTTAACAGGTCACCTTGGCGCAATCCCCTTGTTGC

             *                                                               
       2290 CTTAAAAATTGAGCCCTCTTCCCCATTAATTAAAATAGAGTATTTAACAGAATTAATACAACGGA
        131 CCTAAAAATTGAGCCCTCTTCCCCATTAATTAAAATAGAGTATTTAACAGAATTAATACAACGGA

                                                                             
       2355 AAATAACATCCATAAATACTTCTGTACAACTCATTTTTGTCATTACCCCTTTGATAAAAGACCAT
        196 AAATAACATCCATAAATACTTCTGTACAACTCATTTTTGTCATTACCCCTTTGATAAAAGACCAT

                                          
       2420 TTCACTCTATCATAAGCCTTACTCTTGTCA
        261 TTCACTCTATCATAAGCCTTACTCTTGTCA

       2450 AGTTTCAAAG


Statistics
Matches: 285,  Mismatches: 5, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 293  285  1.00

ACGTcount: A:0.35, C:0.23, G:0.12, T:0.30


Consensus pattern (293 bp):   
AAGATAAGTAATTGTTAGAAAAGATCTACCCTTCCTAATTTGCCAATCTCATAAGTGCTGACAAA
CCTTCTCCACTGAATAGAAACAAATAAGGGCTTAACAGGTCACCTTGGCGCAATCCCCTTGTTGC
CCTAAAAATTGAGCCCTCTTCCCCATTAATTAAAATAGAGTATTTAACAGAATTAATACAACGGA
AAATAACATCCATAAATACTTCTGTACAACTCATTTTTGTCATTACCCCTTTGATAAAAGACCAT
TTCACTCTATCATAAGCCTTACTCTTGTCAGAA
Done.