Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02661.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1764
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40


Found at i:110 original size:6 final size:6

Alignment explanation


    Indices: 99--134  Score: 54
    Period size: 6  Copynumber: 6.0  Consensus size: 6

         89 TCTTTCTTCC

                                    **               
         99 TCTGTT TCTGTT TCTGTT TCTCAT TCTGTT TCTGTT
          1 TCTGTT TCTGTT TCTGTT TCTGTT TCTGTT TCTGTT

        135 ACTCTTATCT


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.03, C:0.19, G:0.14, T:0.64


Consensus pattern (6 bp):   
TCTGTT

Found at i:714 original size:22 final size:22

Alignment explanation


    Indices: 669--714  Score: 58
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        659 ATTAGCGAAT

                               *  
        669 ATATTTTTAAAAAATTATAGAA
          1 ATATTTTTAAAAAATTATAAAA

                       *           
        691 ATATTATTTAATAAATT-TAAAA
          1 ATATT-TTTAAAAAATTATAAAA

              
        713 AT
          1 AT

        715 TAACATGTGT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  22   11  0.52
  23   10  0.48

ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43


Consensus pattern (22 bp):   
ATATTTTTAAAAAATTATAAAA
Done.