Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02672.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 947

Length: 1579
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:323 original size:29 final size:29

Alignment explanation


    Indices: 281--338  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        271 CACTCGATCA

                                         
        281 CTTTAGCTTGTATTTGAGTGATTAAATCT
          1 CTTTAGCTTGTATTTGAGTGATTAAATCT

                                         
        310 CTTTAGCTTGTATTTGAGTGATTAAATCT
          1 CTTTAGCTTGTATTTGAGTGATTAAATCT

        339 TTATTGTTGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.24, C:0.10, G:0.17, T:0.48


Consensus pattern (29 bp):   
CTTTAGCTTGTATTTGAGTGATTAAATCT
Done.