Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02677.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 814

Length: 1358
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28


Found at i:17 original size:12 final size:12

Alignment explanation


    Indices: 1--35  Score: 61
    Period size: 12  Copynumber: 2.9  Consensus size: 12

                        
          1 AGCCTGAGCCTT
          1 AGCCTGAGCCTT

                 *      
         13 AGCCTTAGCCTT
          1 AGCCTGAGCCTT

                       
         25 AGCCTGAGCCT
          1 AGCCTGAGCCT

         36 GAGACTACTA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.17, C:0.34, G:0.23, T:0.26


Consensus pattern (12 bp):   
AGCCTGAGCCTT

Found at i:28 original size:18 final size:18

Alignment explanation


    Indices: 1--35  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

                       *      
          1 AGCCTGAGCCTTAGCCTT
          1 AGCCTGAGCCTGAGCCTT

                 *           
         19 AGCCTTAGCCTGAGCCT
          1 AGCCTGAGCCTGAGCCT

         36 GAGACTACTA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.17, C:0.34, G:0.23, T:0.26


Consensus pattern (18 bp):   
AGCCTGAGCCTGAGCCTT
Done.