Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01207.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2752
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37


Found at i:740 original size:19 final size:19

Alignment explanation


    Indices: 716--754  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        706 AATGAGCCAG

                               
        716 GTATTATTTTCTTATTGTT
          1 GTATTATTTTCTTATTGTT

                               
        735 GTATTATTTTCTTATTGTT
          1 GTATTATTTTCTTATTGTT

             
        754 G
          1 G

        755 AACCATTTTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.15, C:0.05, G:0.13, T:0.67


Consensus pattern (19 bp):   
GTATTATTTTCTTATTGTT

Found at i:762 original size:19 final size:19

Alignment explanation


    Indices: 721--763  Score: 59
    Period size: 19  Copynumber: 2.3  Consensus size: 19

        711 GCCAGGTATT

                           * **
        721 ATTTTCTTATTGTTGTATT
          1 ATTTTCTTATTGTTGAACC

                               
        740 ATTTTCTTATTGTTGAACC
          1 ATTTTCTTATTGTTGAACC

                 
        759 ATTTT
          1 ATTTT

        764 GAAAGATTGC


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.19, C:0.09, G:0.09, T:0.63


Consensus pattern (19 bp):   
ATTTTCTTATTGTTGAACC

Found at i:978 original size:21 final size:21

Alignment explanation


    Indices: 953--995  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        943 TACAAGTATA

                                 
        953 TTTTTATTGAATTTAGTTTTT
          1 TTTTTATTGAATTTAGTTTTT

                 *  *     *      
        974 TTTTTTTTTAATTTGGTTTTT
          1 TTTTTATTGAATTTAGTTTTT

             
        995 T
          1 T

        996 CTTTGTTTTA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.14, C:0.00, G:0.09, T:0.77


Consensus pattern (21 bp):   
TTTTTATTGAATTTAGTTTTT
Done.