Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02696.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1874
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:1681 original size:17 final size:17

Alignment explanation


    Indices: 1659--1692  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1649 TTTGCTTATT

                             
       1659 CACTTCCTTATCAGGGG
          1 CACTTCCTTATCAGGGG

                             
       1676 CACTTCCTTATCAGGGG
          1 CACTTCCTTATCAGGGG

       1693 GGTGCCCTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.18, C:0.29, G:0.24, T:0.29


Consensus pattern (17 bp):   
CACTTCCTTATCAGGGG
Done.