Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00122.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1862
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35


Found at i:681 original size:123 final size:123

Alignment explanation


    Indices: 528--756  Score: 318
    Period size: 123  Copynumber: 1.9  Consensus size: 123

        518 TTTGCCTCAT

                        *      *           *       *                         
        528 CTGGATTGTTGATGAAATTTGGGTTTGAAACTAAAAGCTTATCCAAGTTAGTAAGCGAAAGGTTC
          1 CTGGATTGTTGACGAAATTCGGGTTTGAAACCAAAAGCTCATCCAAGTTAGTAAGCGAAAGGTTC

                                 *                                      
        593 AAGTCC-TTTCCATTCGTGTTTTAGCTT-TGTTCATCTTGTTTTTCCTCATATGTATTGC
         66 AAGTCCTTTTCCATT-GTGTTGTAG-TTCTGTTCATCTTGTTTTTCCTCATATGTATTGC

                                            *         * *         **         
        651 CTGGATTGTTGACGAAATTCGGGTTTGAAACCGAAAGCTCATTCGAGTTAGTAATTGAAAGGTTC
          1 CTGGATTGTTGACGAAATTCGGGTTTGAAACCAAAAGCTCATCCAAGTTAGTAAGCGAAAGGTTC

                      **                             
        716 AAGTCCTTTTTGATTGTGTTGTAGTTCTGTTCATCTTGTTT
         66 AAGTCCTTTTCCATTGTGTTGTAGTTCTGTTCATCTTGTTT

        757 AGATTGCTGT


Statistics
Matches: 92,  Mismatches: 12, Indels: 4
        0.85            0.11        0.04

Matches are distributed among these distances:
 122    2  0.02
 123   84  0.91
 124    6  0.07

ACGTcount: A:0.23, C:0.14, G:0.21, T:0.41


Consensus pattern (123 bp):   
CTGGATTGTTGACGAAATTCGGGTTTGAAACCAAAAGCTCATCCAAGTTAGTAAGCGAAAGGTTC
AAGTCCTTTTCCATTGTGTTGTAGTTCTGTTCATCTTGTTTTTCCTCATATGTATTGC
Done.