Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02707.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 404

Length: 674
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32


Found at i:485 original size:75 final size:79

Alignment explanation


    Indices: 362--580  Score: 293
    Period size: 83  Copynumber: 2.8  Consensus size: 79

        352 ACCAAATAGA

                     *            *        *        *                        
        362 TATGTATATTTTAGGAAAATCCTCCATGAAGAGTTATCAGAGAAGCTTTTAGGTAGTGATGTAGC
          1 TATGTATATATTAGGAAAATCCGCCATGAAGGGTTATCAGTGAAGCTTTTAGGTAGTGATGTAGC

                          
        427 -AT-TA-TA-TATG
         66 AATATAGTAGTATG

                  *                              *                           
        437 TATGTACATATTAGGAAAATCCGCCATGAAGGGTTATTAGTGAAGCTTTTAGGTAGTGATGTAGC
          1 TATGTATATATTAGGAAAATCCGCCATGAAGGGTTATCAGTGAAGCTTTTAGGTAGTGATGTAGC

                              
        502 ATAATATATGTATGTATG
         66 --AATATA-GTA-GTATG

                        *   *             *                              
        520 TATGTATATATTCGGACAATCCGCCATGAAAGGTTATCAGTGAAGCTTTTAGGTAGTGATG
          1 TATGTATATATTAGGAAAATCCGCCATGAAGGGTTATCAGTGAAGCTTTTAGGTAGTGATG

        581 ATGTAGCTGC


Statistics
Matches: 125,  Mismatches: 11, Indels: 8
        0.87            0.08        0.06

Matches are distributed among these distances:
  75   59  0.47
  78    2  0.02
  79    2  0.02
  81    2  0.02
  83   60  0.48

ACGTcount: A:0.32, C:0.10, G:0.23, T:0.35


Consensus pattern (79 bp):   
TATGTATATATTAGGAAAATCCGCCATGAAGGGTTATCAGTGAAGCTTTTAGGTAGTGATGTAGC
AATATAGTAGTATG
Done.