Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02739.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2925
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29


Found at i:1256 original size:64 final size:64

Alignment explanation


    Indices: 1184--1304  Score: 215
    Period size: 64  Copynumber: 1.9  Consensus size: 64

       1174 TCAGTTTTCG

                            *                                               
       1184 GGGAAAATCCCTCATGGAATTGGGGAACTGAAAAGATTGAGCAGCCTTGAATTGCAATATAACA
          1 GGGAAAATCCCTCATGAAATTGGGGAACTGAAAAGATTGAGCAGCCTTGAATTGCAATATAACA

                         *                   *                       
       1248 GGGAAAATCCCTCGTGAAATTGGGGAACTGAAAGGATTGAGCAGCCTTGAATTGCAA
          1 GGGAAAATCCCTCATGAAATTGGGGAACTGAAAAGATTGAGCAGCCTTGAATTGCAA

       1305 GAAAACGGGT


Statistics
Matches: 54,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  64   54  1.00

ACGTcount: A:0.36, C:0.16, G:0.27, T:0.21


Consensus pattern (64 bp):   
GGGAAAATCCCTCATGAAATTGGGGAACTGAAAAGATTGAGCAGCCTTGAATTGCAATATAACA
Done.