Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02747.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 765

Length: 1276
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30


Found at i:771 original size:67 final size:67

Alignment explanation


    Indices: 653--848  Score: 311
    Period size: 67  Copynumber: 2.9  Consensus size: 67

        643 CGAGCATAGA

                *          * *  *     * *  *              *                  
        653 GATAGTGAAGCAAATGATTCAGATTCTGGAACTGCTATTCCTACACAAAGCAATATAGTTTCCGT
          1 GATAATGAAGCAAATTACTCCGATTCCGAAATTGCTATTCCTACACGAAGCAATATAGTTTCCGT

              
        718 TT
         66 TT

                                                    *                        
        720 GATAATGAAGCAAATTACTCCGATTCCGAAATTGCTATTCATACACGAAGCAATATAGTTTCCGT
          1 GATAATGAAGCAAATTACTCCGATTCCGAAATTGCTATTCCTACACGAAGCAATATAGTTTCCGT

              
        785 TT
         66 TT

                                                                          
        787 GATAATGAAGCAAATTACTCCGATTCCGAAATTGCTATTCCTACACGAAGCAATATAGTTTC
          1 GATAATGAAGCAAATTACTCCGATTCCGAAATTGCTATTCCTACACGAAGCAATATAGTTTC

        849 TTTCTCAAAT


Statistics
Matches: 119,  Mismatches: 10, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  67  119  1.00

ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Consensus pattern (67 bp):   
GATAATGAAGCAAATTACTCCGATTCCGAAATTGCTATTCCTACACGAAGCAATATAGTTTCCGT
TT
Done.