Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02749.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4430
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33


Found at i:2136 original size:33 final size:33

Alignment explanation


    Indices: 2099--2239  Score: 178
    Period size: 33  Copynumber: 4.3  Consensus size: 33

       2089 CTTTACTTTT

                     *    *                   
       2099 CTCACCTGCCTTTTTAATGGATTCACC-TTCTCC
          1 CTCACCTGCATTTTCAATGGATTCACCTTTC-CC

                    *                  *     
       2132 CTCACCTGGATTTTCAATGGATTCACCCTTCCC
          1 CTCACCTGCATTTTCAATGGATTCACCTTTCCC

                             *      *  *      
       2165 CTCACCTGC-TTTTGCAGTGGATTTACGTTTCCC
          1 CTCACCTGCATTTT-CAATGGATTCACCTTTCCC

                    *                        
       2198 CTCACCTGGATTTTCAATGGATTCACCTTTCCC
          1 CTCACCTGCATTTTCAATGGATTCACCTTTCCC

                     
       2231 CTCACCTGC
          1 CTCACCTGC

       2240 TGCTACAGGT


Statistics
Matches: 92,  Mismatches: 13, Indels: 6
        0.83            0.12        0.05

Matches are distributed among these distances:
  32    4  0.04
  33   81  0.88
  34    7  0.08

ACGTcount: A:0.16, C:0.35, G:0.13, T:0.36


Consensus pattern (33 bp):   
CTCACCTGCATTTTCAATGGATTCACCTTTCCC
Done.