Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02754.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4053
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35


Found at i:1278 original size:39 final size:39

Alignment explanation


    Indices: 1232--1310  Score: 149
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       1222 GTCTTATAGT

                                                   
       1232 TTAAGATCTTATTTTGTATCACTGCTACCAGAAATTTCA
          1 TTAAGATCTTATTTTGTATCACTGCTACCAGAAATTTCA

                                 *                 
       1271 TTAAGATCTTATTTTGTATCATTGCTACCAGAAATTTCA
          1 TTAAGATCTTATTTTGTATCACTGCTACCAGAAATTTCA

             
       1310 T
          1 T

       1311 ACTTTTTTTA


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  39   39  1.00

ACGTcount: A:0.30, C:0.16, G:0.10, T:0.43


Consensus pattern (39 bp):   
TTAAGATCTTATTTTGTATCACTGCTACCAGAAATTTCA
Done.